Connex for QuickBooks Desktop

Connex for QuickBooks Desktop

by Sync with Connex

Sync inventory and orders with QuickBooks Desktop

4.7 of 5 stars(13 reviews)

Automatic Accounting

Easily sync and post sales, customer info, products, refunds/partial refunds and more to QuickBooks desktop. No more data entry!

Inventory Management

Sync inventory updates from QuickBooks desktop to your Shopify store in second - no more oversells!

Easy Set-up

With no software to download and no plugins to install, Connex set-ups up easily in just a few minutes.

About Connex for QuickBooks Desktop

Automatic sync

Connex automatically syncs customers, inventory, products, and orders between Shopify and QuickBooks Pro, Premier, and Enterprise.

Sync full and partial refunds

Connex automatically syncs partial refunds to QuickBooks.

Track gift card liabilities

Connex syncs gift card purchase and usage to QuickBooks.

Easily match Shopify payouts to deposits

Upload your Shopify payout spreadsheet to Connex and our tool will match orders to the deposit.

Sync Orders from QuickBooks

Sync orders from QuickBooks to Shopify. This is ideal for phone or mail orders.

Multi-Channel support

Easily add an automatic sync with Amazon, eBay, ShipStation and more to QuickBooks - all within Connex.

No more oversells

Sync inventory and pricing updates between your sales channels and QuickBooks on a scheduled basis.

Easily map items

Easily map inventory items, services, bundles and product variants to any item in QuickBooks. Connex supports inventory assembly and grouped products.

Connex for QuickBooks is certified with Intuit QuickBooks. Ideal for small-to-medium-sized businesses with QuickBooks Enterprise, Pro, Premier, Wholesale & Manufacturing. An account with Connex for QuickBooks is required.

Connex is not compatible with Mac devices, MacOS, and iOS. For Mac users, QuickBooks must be hosted via a Windows server.

Integrates with

  • Amazon,
  • eBay,
  • InfusionSoft,
  • ShipStation,
  • Walmart,
  • QuickBooks Desktop

See the app in action

Explore how the app works in an example store.

View example store

Media gallery


Pricing 14-day free trial

See all pricing options


One-time activation of $399.00.

  • Syncs up to 6,000 annual orders.

  • Does not work with QuickBooks Point of Sale.

  • Includes on-boarding & set-up support



One-time activation of $399.00.

  • Syncs up to 12,000 annual orders,

  • Required to integrate with QuickBooks Point of Sale.

  • Includes on-boarding & set-up support.



One-time activation of $399.00.

  • Syncs up to 30,000 annual orders.

  • Can integrate with QuickBooks Point of Sale.

  • Includes on-boarding & set-up support.

* All charges are billed in USD. Recurring charges, including monthly or usage-based charges, are billed every 30 days.

Overall rating
4.7 of 5 stars
Based on 13 reviews

  • 5 of 5 stars
    92% of ratings are 5 stars
  • 4 of 5 stars
    0% of ratings are 4 stars
  • 3 of 5 stars
    0% of ratings are 3 stars
  • 2 of 5 stars
    0% of ratings are 2 stars
  • 1 of 5 stars
    8% of ratings are 1 stars

Most recent reviews


First, let's understand that syncing orders, inventory, and other sensitive info from Shopify to Quickbooks (or Quickbooks to Shopify) is extremely complex. I've worked with a number of integration and sync solutions before over the years. Connex is by far the most intuitive, flexible, and consistent. It functions more as an enterprise solution and these typically cost $$$ per month! The support team at Connex is unbelievable. Support ticket response is faster than any other app in the Shopify marketplace. Some apps respond in days or even weeks. These guys hit you back in a few hours (sometimes less than 1 hr). Plus, the expertise of the support team is outstanding. Most app support is level 1 at best. With Connex, your ticket will be responded to by a level 2 or higher every time. Can't say enough good things about this solution and the team. If you're trying to sync Shopify and QB, you'd be crazy not to use this app.

Flatyz Online

Thanks so much Joe, Sandi and Chris for all of your help! You all are very responsive and helpful! QuickBooks integration with our Amazon and Shopify stores is paramount and your solutions really work! Having the ability to automatically upload and sync the Amazon settlement report is a huge time saver, not to mention the daily syncs with Shopify. Look forward to adding more brands/sales channels and building our relationship.

All the best,

Joe Petruziello,
Managing Partner
Point One International, Ltd., DBA Flatyz

FuelTech USA

We have been looking for an app to help us sync QuickBooks to Shopify and this does exactly what we have been after. We were able to get everything setup and working by our own and then over a few e-mails and one on-boarding phone call, have been able to get all the settings working properly for our business. The team at JMA have been great to work with and quick to respond to any question. We highly recommend this app!